PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.27603s0001.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family SRS
Protein Properties Length: 344aa    MW: 38268.7 Da    PI: 7.0372
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.27603s0001.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702228.51.2e-701162822154
                DUF702   2 rsgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrel...........k 79 
                           r+g+++CqdCGnqakkdC h+RCRtCCksrgf+C+thvkstWvpaakrrer +qla++++++a+s++++++kr re            +
  Araha.27603s0001.1.p 116 RQGGMNCQDCGNQAKKDCPHMRCRTCCKSRGFHCQTHVKSTWVPAAKRRERLAQLASLQHHSASSRETQNAKRLREAsggdnnddkdhS 204
                           7899**********************************************************999977777777766666666666557 PP

                DUF702  80 skkqsalsstklssaeskkeletss.lPeevsseavfrcvrvssvdd..geeelaYqtavsigGhvfkGiLydqGlee 154
                               sal++t++++a+s++ le+s+ lP+ev+s+avfrcvrvss+++  +++e+aYqtav+igGhvfkGiLydqG+++
  Araha.27603s0001.1.p 205 GGGGSALANTRVVNANSNSGLEVSQhLPPEVNSPAVFRCVRVSSIEEdeDDQEYAYQTAVNIGGHVFKGILYDQGPDQ 282
                           778899**************998876*******************98535567***********************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051425.1E-64119281IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016239.0E-28121163IPR006510Zinc finger, lateral root primordium type 1
TIGRFAMsTIGR016242.5E-26230280IPR006511Lateral Root Primordium type 1, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048467Biological Processgynoecium development
Sequence ? help Back to Top
Protein Sequence    Length: 344 aa     Download sequence    Send to blast
MAGFFYLGGR DNNNKQDHHQ VDKDHHHQDK SNYLYLYKDE IYNNNKGFEI WPPQYFQQQE  60
HQQQQQQQQH ATAPANFYSF GMVPSGSSSN NNNNRSRSLY FNVVSDHEPG GFTVTRQGGM  120
NCQDCGNQAK KDCPHMRCRT CCKSRGFHCQ THVKSTWVPA AKRRERLAQL ASLQHHSASS  180
RETQNAKRLR EASGGDNNDD KDHSGGGGSA LANTRVVNAN SNSGLEVSQH LPPEVNSPAV  240
FRCVRVSSIE EDEDDQEYAY QTAVNIGGHV FKGILYDQGP DQDHNHHLNL LASTATTTNV  300
EETATKTVTG NNNNGLMLDP SSLYPAQLNS FIAGTPFFTP PRS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY8006200.0AY800620.1 Arabidopsis thaliana clone H0000001204 hypothetical protein (AT1G75520) mRNA, complete cds.
GenBankAY9247300.0AY924730.1 Arabidopsis thaliana hypothetical protein (At1g75520) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_177684.10.0SHI-related sequence 5
SwissprotQ9LQZ50.0SRS5_ARATH; Protein SHI RELATED SEQUENCE 5
TrEMBLD7KSQ40.0D7KSQ4_ARALL; Putative uncharacterized protein
STRINGAT1G75520.10.0(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM26452572
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75520.10.0SHI-related sequence 5